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RECOMB
2009
Springer
9 years 6 months ago
Rearrangement Models and Single-Cut Operations
Abstract. There have been many widely used genome rearrangement models, such as reversals, HannenhalliPevzner, and double-cut and join. Though each one can be precisely defined, t...
Paul Medvedev, Jens Stoye
RECOMB
2009
Springer
9 years 6 months ago
Finding Nested Common Intervals Efficiently
Guillaume Blin, Jens Stoye
RECOMB
2009
Springer
9 years 6 months ago
Counting All DCJ Sorting Scenarios
In genome rearrangements, the double cut and join (DCJ) operation, introduced by Yancopoulos et al., allows to represent most rearrangement events that could happen in multichromos...
Marília D. V. Braga, Jens Stoye
RECOMB
2009
Springer
9 years 6 months ago
Pseudo Boolean Programming for Partially Ordered Genomes
Comparing genomes of different species is a crucial problem in comparative genomics. Different measures have been proposed to compare two genomes: number of common intervals, num...
Sébastien Angibaud, Guillaume Fertin, Annel...
RECOMB
2009
Springer
9 years 6 months ago
Inferring the Recent Duplication History of a Gene Cluster
Abstract. Much important evolutionary activity occurs in gene clusters, where a copy of a gene may be free to evolve new functions. Computational methods to extract evolutionary in...
Giltae Song, Louxin Zhang, Tomás Vinar, Web...
RECOMB
2009
Springer
9 years 6 months ago
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods
In 2006, a debate has risen on the question of the efficiency of bioinformatics methods to reconstruct mammalian ancestral genomes. Three years later, Gordon et al. (PLoS Genetics,...
Eric Tannier
RECOMB
2009
Springer
9 years 6 months ago
Reconstructing Histories of Complex Gene Clusters on a Phylogeny
Abstract. Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analy...
Tomás Vinar, Brona Brejová, Giltae S...
RECOMB
2009
Springer
9 years 6 months ago
Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination
This paper presents a new approach to site-directed recombination, swapping combinations of selected discontiguous fragments from a source protein in place of corresponding fragmen...
Wei Zheng, Karl E. Griswold, Chris Bailey-Kellogg
RECOMB
2009
Springer
9 years 6 months ago
A Probabilistic Graphical Model for Ab Initio Folding
Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed...
RECOMB
2009
Springer
9 years 6 months ago
Cross Species Expression Analysis of Innate Immune Response
Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Jo...
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