Sciweavers

RECOMB
2010
Springer
13 years 6 months ago
An Algorithmic Framework for Predicting Side-Effects of Drugs
Abstract. One of the critical stages in drug development is the identification of potential side effects for promising drug leads. Large scale clinical experiments aimed at discove...
Nir Atias, Roded Sharan
RECOMB
2010
Springer
13 years 8 months ago
MoGUL: Detecting Common Insertions and Deletions in a Population
Abstract. While the discovery of structural variants in the human population is ongoing, most methods for this task assume that the genome is sequenced to high coverage (e.g. 40x),...
Seunghak Lee, Eric Xing, Michael Brudno
RECOMB
2010
Springer
13 years 9 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
RECOMB
2010
Springer
13 years 9 months ago
Compressing Genomic Sequence Fragments Using SlimGene
Christos Kozanitis, Chris Saunders, Semyon Kruglya...
RECOMB
2010
Springer
13 years 11 months ago
On the Genealogy of Asexual Diploids
Given molecular genetic data from diploid individuals that, at present, reproduce mostly or exclusively asexually without recombination, an important problem in evolutionary biolog...
Fumei Lam, Charles H. Langley, Yun S. Song
RECOMB
2010
Springer
13 years 11 months ago
Hierarchical Generative Biclustering for MicroRNA Expression Analysis
Clustering methods are a useful and common first step in gene expression studies, but the results may be hard to interpret. We bring in explicitly an indicator of which genes tie ...
José Caldas, Samuel Kaski
RECOMB
2010
Springer
13 years 11 months ago
Automated High-Dimensional Flow Cytometric Data Analysis
Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Ro...
RECOMB
2010
Springer
13 years 11 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
RECOMB
2010
Springer
13 years 11 months ago
Incremental Signaling Pathway Modeling by Data Integration
Constructing quantitative dynamic models of signaling pathways is an important task for computational systems biology. Pathway model construction is often an inherently incremental...
Geoffrey Koh, David Hsu, P. S. Thiagarajan
RECOMB
2010
Springer
13 years 11 months ago
Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions
Raluca Gordân, Alexander J. Hartemink, Marth...