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BMCBI
2007
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13 years 4 months ago
Application of a correlation correction factor in a microarray cross-platform reproducibility study
Background: Recent research examining cross-platform correlation of gene expression intensities has yielded mixed results. In this study, we demonstrate use of a correction factor...
Kellie J. Archer, Catherine I. Dumur, G. Scott Tay...
BMCBI
2010
102views more  BMCBI 2010»
13 years 4 months ago
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
Background: Chromatin immunoprecipitation followed by microarray hybridization (ChIP-chip) is used to study protein-DNA interactions and histone modifications on a genome-scale. T...
Shouyong Peng, Mitzi I. Kuroda, Peter J. Park
BMCBI
2010
105views more  BMCBI 2010»
13 years 4 months ago
Evaluation of fecal mRNA reproducibility via a marginal transformed mixture modeling approach
Background: Developing and evaluating new technology that enables researchers to recover gene-expression levels of colonic cells from fecal samples could be key to a non-invasive ...
Nysia I. George, Joanne R. Lupton, Nancy D. Turner...
BMCBI
2010
100views more  BMCBI 2010»
13 years 4 months ago
Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Background: Reproducibility of results can have a significant impact on the acceptance of new technologies in gene
Gregor Stiglic, Mateja Bajgot, Peter Kokol