SCFBM
2008
13 years 3 months ago
2008
: FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
NAR
2007
13 years 3 months ago
2007
INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can r...
JCB
2002
13 years 4 months ago
2002
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
BMCBI
2008
13 years 4 months ago
2008
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
BMCBI
2008
13 years 4 months ago
2008
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
BMCBI
2008
13 years 4 months ago
2008
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
BIOSYSTEMS
2007
13 years 4 months ago
2007
RNA secondary structure is an important computational model to understand how genetic variation maps into phenotypic (structural) variation. Evolutionary innovation in RNA structu...
BMCBI
2010
13 years 4 months ago
2010
Background: To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of...
WALCOM
2007
IEEE
13 years 5 months ago
2007
IEEE
In this paper, we consider the pattern matching problem in DNA and RNA sequences where either the pattern or the text can be degenerate i.e. contain sets of characters. We present ...
ISMB
1997
13 years 5 months ago
1997
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...