107views more  PVLDB 2008»
9 years 7 months ago
Finding relevant patterns in bursty sequences
Sequence data is ubiquitous and finding frequent sequences in a large database is one of the most common problems when analyzing sequence data. Unfortunately many sources of seque...
Alexander Lachmann, Mirek Riedewald
117views more  NAR 2000»
9 years 7 months ago
The TIGR Gene Indices: reconstruction and representation of expressed gene sequences
Expressed sequence tags (ESTs) have provided a first glimpse of the collection of transcribed sequences in a variety of organisms. However, a careful analysis of this sequence dat...
John Quackenbush, Feng Liang, Ingeborg Holt, Geo P...
102views more  BMCBI 2004»
9 years 7 months ago
FRAGS: estimation of coding sequence substitution rates from fragmentary data
Background: Rates of substitution in protein-coding sequences can provide important insights into evolutionary processes that are of biomedical and theoretical interest. Increased...
Estienne C. Swart, Winston A. Hide, Cathal Seoighe
116views more  BMCBI 2005»
9 years 8 months ago
Automating Genomic Data Mining via a Sequence-based Matrix Format and Associative Rule Set
There is an enormous amount of information encoded in each genome
Jonathan D. Wren, David Johnson, Le Gruenwald
72views more  IJDMMM 2008»
9 years 8 months ago
Mining event histories: a social science perspective
We explore how recent data-mining-based tools developed in domains such as biomedicine or text-mining for extracting interesting knowledge from sequence data could be applied to pe...
Gilbert Ritschard, Alexis Gabadinho, Nicolas S. M&...
121views more  BMCBI 2006»
9 years 8 months ago
Splice site identification using probabilistic parameters and SVM classification
Background: Recent advances and automation in DNA sequencing technology has created a vast amount of DNA sequence data. This increasing growth of sequence data demands better and ...
A. K. M. A. Baten, Bill C. H. Chang, Saman K. Halg...
102views more  BMCBI 2008»
9 years 8 months ago
Fast splice site detection using information content and feature reduction
Background: Accurate identification of splice sites in DNA sequences plays a key role in the prediction of gene structure in eukaryotes. Already many computational methods have be...
A. K. M. A. Baten, Saman K. Halgamuge, Bill C. H. ...
125views more  BMCBI 2008»
9 years 8 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
130views Data Mining» more  SDM 2008»
9 years 9 months ago
Mining Sequence Classifiers for Early Prediction
Supervised learning on sequence data, also known as sequence classification, has been well recognized as an important data mining task with many significant applications. Since te...
Zhengzheng Xing, Jian Pei, Guozhu Dong, Philip S. ...
148views Database» more  DASFAA 2010»
10 years 10 days ago
Competitive Privacy: Secure Analysis on Integrated Sequence Data
Sequence data analysis has been extensively studied in the literature. However, most previous work focuses on analyzing sequence data from a single source or party. In many applica...
Raymond Chi-Wing Wong, Eric Lo