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FEGC
2009
86views Biometrics» more  FEGC 2009»
10 years 2 months ago
Binary Sequences and Association Graphs for Fast Detection of Sequential Patterns
We develop an efficient algorithm for detecting frequent patterns that occur in sequence databases under certain constraints. By combining the use of bit vector representations of ...
Selim Mimaroglu, Dan A. Simovici
NAR
2008
91views more  NAR 2008»
10 years 4 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
DKE
2007
101views more  DKE 2007»
10 years 4 months ago
Parameterized pattern queries
We introduce parameterized pattern queries as a new paradigm to extend traditional pattern expressions over sequence databases. A parameterized pattern is essentially a string mad...
Cédric du Mouza, Philippe Rigaux, Michel Sc...
CIKM
2005
Springer
10 years 9 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
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