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DAM
1999
114views more  DAM 1999»
13 years 4 months ago
Perfect and Almost Perfect Sequences
The autocorrelation function of a sequence is a measure for how much the given sequence di ers from its translates. Periodic binary sequences with good correlation properties have...
Dieter Jungnickel, Alexander Pott
IPL
2002
80views more  IPL 2002»
13 years 4 months ago
A note on models for non-probabilistic analysis of packet switching networks
We consider two models commonly used in the literature to model adversarial injection of packets into a packet switching network. We establish the relation between these two types...
Adi Rosén
DM
1998
60views more  DM 1998»
13 years 4 months ago
On numbers of Davenport-Schinzel sequences
One class of Davenport-Schinzel sequences consists of finite sequences over n symbols without immediate repetitions and without any subsequence of the type abab. We present a bij...
Martin Klazar
AAECC
1998
Springer
88views Algorithms» more  AAECC 1998»
13 years 4 months ago
A Generalization of the Massey-Ding Algorithm
The set of all linear recurrence relations satisfied by given sequences of finite length is described by the annihilator ideal of the sequences. The MasseyDing algorithm to compu...
Joachim Althaler, Arne Dür
NAR
2000
117views more  NAR 2000»
13 years 4 months ago
The tmRNA Website
tmRNA (also known as 10Sa RNA) is so-named for its dual tRNA-like and mRNA-like nature. It is employed in a remarkable trans-translation process to add a Cterminal peptide tag to ...
Kelly P. Williams
NAR
2000
117views more  NAR 2000»
13 years 4 months ago
The TIGR Gene Indices: reconstruction and representation of expressed gene sequences
Expressed sequence tags (ESTs) have provided a first glimpse of the collection of transcribed sequences in a variety of organisms. However, a careful analysis of this sequence dat...
John Quackenbush, Feng Liang, Ingeborg Holt, Geo P...
BMCBI
2002
100views more  BMCBI 2002»
13 years 4 months ago
An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification
Background: The identification of species or species groups with specific oligo-nucleotides as molecular signatures is becoming increasingly popular for bacterial samples. However...
Alexander E. Pozhitkov, Diethard Tautz
BMCBI
2002
109views more  BMCBI 2002»
13 years 4 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
BMCBI
2004
88views more  BMCBI 2004»
13 years 4 months ago
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
Background: This paper addresses the problem of discovering transcription factor binding sites in heterogeneous sequence data, which includes regulatory sequences of one or more g...
Saurabh Sinha, Mathieu Blanchette, Martin Tompa
BMCBI
2004
84views more  BMCBI 2004»
13 years 4 months ago
Comparison of computational methods for identifying translation initiation sites in EST data
Background: Expressed Sequence Tag (EST) sequences are generally single-strand, single-pass sequences, only 200
Afshin Nadershahi, Scott C. Fahrenkrug, Lynda B. M...