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BMCBI
2005
132views more  BMCBI 2005»
13 years 3 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
TIT
2008
78views more  TIT 2008»
13 years 3 months ago
New Binary Sequences With Optimal Autocorrelation Magnitude
New binary sequences of period
Nam Yul Yu, Guang Gong
BMCBI
2005
190views more  BMCBI 2005»
13 years 3 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
BMCBI
2005
106views more  BMCBI 2005»
13 years 3 months ago
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
Background: Searching for approximate patterns in large promoter sequences frequently produces an exceedingly high numbers of results. Our aim was to exploit biological knowledge ...
Stefania Bortoluzzi, Alessandro Coppe, Andrea Biso...
TIP
2008
169views more  TIP 2008»
13 years 3 months ago
Weakly Supervised Learning of a Classifier for Unusual Event Detection
In this paper, we present an automatic classification framework combining appearance based features and Hidden Markov Models (HMM) to detect unusual events in image sequences. One...
Mark Jager, Christian Knoll, Fred A. Hamprecht
BIOINFORMATICS
2005
75views more  BIOINFORMATICS 2005»
13 years 3 months ago
DbW: automatic update of a functional family-specific multiple alignment
: Recent advances in gene sequencing have provided complete sequence information for a number of genomes and as a result the amount of data in the sequence databases is growing at ...
Veronique Prigent, Jean-Claude Thierry, Olivier Po...
TCS
2008
13 years 3 months ago
Solving difference equations whose coefficients are not transcendental
We consider a large class of sequences, called admissible sequences, which are defined by systems of (possibly nonlinear) difference equations. A procedure for recursively enumera...
Manuel Kauers
SIGPRO
2008
104views more  SIGPRO 2008»
13 years 3 months ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi
NPL
2006
85views more  NPL 2006»
13 years 3 months ago
A Neural Model for Context-dependent Sequence Learning
A novel neural network model is described that implements context-dependent learning of complex sequences. The model utilises leaky integrate-and-fire neurons to extract timing inf...
Luc Berthouze, Adriaan G. Tijsseling
NAR
2006
71views more  NAR 2006»
13 years 3 months ago
sgTarget: a target selection resource for structural genomics
sgTarget (http://www.ysbl.york.ac.uk/sgTarget) is a web-based resource to aid the selection and prioritization of candidate proteins for structure determination. The system annota...
Ana P. C. Rodrigues, Barry J. Grant, Roderick E. H...