8 years 8 months ago
AnToNIa: A Software Tool for the Hemodynamic Analysis of Cerebral Vascular Malformations Using 3D and 4D MRA Image Sequences
Abstract: Stroke is the second most common cause of death and major cause of disability worldwide. Approx. 20% of cerebral strokes are caused by hemorrhages due to rupture of cereb...
Nils Daniel Forkert, Dennis Säring, Jens Fieh...
218views Image Analysis» more  SMI 2010»
8 years 8 months ago
A Benchmark for 3D Mesh Watermarking
This paper presents a benchmarking system for the evaluation of robust mesh watermarking methods. The proposed benchmark has three different components: a "standard" mesh...
Kai Wang, Guillaume Lavoué, Florence Denis,...
8 years 10 months ago
Avida: A Software Platform for Research in Computational Evolutionary Biology
The Avida digital evolution platform is a software tool used to perform experimental evolution research with self-replicating computer programs ("digital organisms"). Av...
Charles Ofria, Claus O. Wilke
104views more  BMCBI 2006»
8 years 10 months ago
GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes
Background: Nowadays, a variety of (bio-)polymers can be analyzed by mass spectrometry. The detailed interpretation of the spectra requires a huge number of "hypothesis cycle...
Filippo Rusconi
87views more  BIOINFORMATICS 2006»
8 years 10 months ago
COPASI - a COmplex PAthway SImulator
Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access...
Stefan Hoops, Sven Sahle, Ralph Gauges, Christine ...
226views more  BMCBI 2008»
8 years 10 months ago
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining
Background: New systems biology studies require researchers to understand how interplay among myriads of biomolecular entities is orchestrated in order to achieve high-level cellu...
Tianxiao Huan, Andrey Y. Sivachenko, Scott H. Harr...
131views more  BMCBI 2008»
8 years 10 months ago
CoCoNUT: an efficient system for the comparison and analysis of genomes
Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohl...
109views more  BMCBI 2008»
8 years 10 months ago
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
118views more  BMCBI 2010»
8 years 10 months ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...
8 years 11 months ago
A software tool for optimal class-hierarchy design based on the use-relationship among functions and variables
We present a software tool for creating an optimal classhierarchy from the use-relationship among data-items and functions based on the method in Kundu and Gwee [3]. The tool dete...
Nigel Gwee, Sukhamay Kundu