BMCBI
2006
13 years 4 months ago
2006
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
BIOCOMP
2009
2009
Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices
13 years 5 months ago
Current biological sequence comparison tools frequently fail to recognize matches between homologs when sequence similarity is below the twilight zone of less than 25% sequence id...
GCB
2004
Springer
13 years 8 months ago
2004
Springer
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
BIRD
2007
Springer
13 years 8 months ago
2007
Springer
Fast search algorithms for finding good instances of patterns given as position specific scoring matrices are developed, and some empirical results on their performance on DNA sequ...