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CDC
2010
IEEE
141views Control Systems» more  CDC 2010»
12 years 11 months ago
Hybrid moment computation algorithm for biochemical reaction networks
Moment computation is essential to the analysis of stochastic kinetic models of biochemical reaction networks. It is often the case that the moment evolution, usually the first and...
Yun-Bo Zhao, Jongrae Kim, João Pedro Hespan...
CORR
2010
Springer
105views Education» more  CORR 2010»
13 years 1 months ago
On Designing Multicore-aware Simulators for Biological Systems
The stochastic simulation of biological systems is an increasingly popular technique in bioinformatics. It often is an enlightening technique, which may however result in being com...
Marco Aldinucci, Mario Coppo, Ferruccio Damiani, M...
WEBI
2010
Springer
13 years 2 months ago
Stochastic Simulation of Web Users
A biologically inspired cognitive model is presented for human decision making and applied to the simulation of the web user. The model is based on the Neurophysiology description ...
Pablo E. Román, Juan D. Velásquez
TCSB
2010
13 years 2 months ago
Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan Operon
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
Céline Kuttler, Cédric Lhoussaine, M...
BMCBI
2006
179views more  BMCBI 2006»
13 years 4 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
WSC
1997
13 years 5 months ago
Bayesian Analysis for Simulation Input and Output
The paper summarizes some important results at the intersection of the fields of Bayesian statistics and stochastic simulation. Two statistical analysis issues for stochastic sim...
Stephen E. Chick
WSC
2000
13 years 5 months ago
High resolution satellite communication simulation
The purpose of this paper is to develop and demonstrate Simulation of Satellite Communications (SIMSATCOM), a high resolution, stochastic simulation of satellite communications fo...
Brandee L. Murphy
WSC
2008
13 years 6 months ago
Stochastic kriging for simulation metamodeling
We extend the basic theory of kriging, as applied to the design and analysis of deterministic computer experiments, to the stochastic simulation setting. Our goal is to provide fl...
Bruce E. Ankenman, Barry L. Nelson, Jeremy Staum
WSC
2008
13 years 6 months ago
Comparing two systems: Beyond common random numbers
Suppose one wishes to compare two closely related systems via stochastic simulation. Common random numbers (CRN) involves using the same streams of uniform random variates as inpu...
Samuel Ehrlichman, Shane G. Henderson
IPPS
2006
IEEE
13 years 10 months ago
Performance analysis of stochastic process algebra models using stochastic simulation
We present a translation of a generic stochastic process algebra model into a form suitable for stochastic simulation. By systematically generating rate equations from a process d...
Jeremy T. Bradley, Stephen T. Gilmore, Nigel Thoma...