Synteny Blocks | Sciweavers

15

BMCBI
2011

253views Artificial Intelligence» more BMCBI 2011»

Screening synteny blocks in pairwise genome comparisons through integer programming

12 years 11 months ago

Background: It is difficult to accurately interpret chromosomal correspondences such as true orthology and paralogy due to significant divergence of genomes from a common ancestor...

Haibao Tang, Eric Lyons, Brent S. Pedersen, James ...

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11

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BMCBI
2008

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SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes

13 years 4 months ago

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Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...

Frédéric Lemoine, Bernard Labedan, O...

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11

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ISAAC
2009
Springer

127views Algorithms» more ISAAC 2009»

Maximal Strip Recovery Problem with Gaps: Hardness and Approximation Algorithms

13 years 11 months ago

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Abstract. Given two comparative maps, that is two sequences of markers each representing a genome, the Maximal Strip Recovery problem (MSR) asks to extract a largest sequence of ma...

Laurent Bulteau, Guillaume Fertin, Irena Rusu

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6

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RECOMB
2005
Springer

120views Computational Biology» more RECOMB 2005»

Maximizing Synteny Blocks to Identify Ancestral Homologs

14 years 4 months ago

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Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk

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