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145views more  JMLR 2010»
10 years 8 months ago
Event based text mining for integrated network construction
The scientific literature is a rich and challenging data source for research in systems biology, providing numerous interactions between biological entities. Text mining technique...
Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer
126views more  BMCBI 2010»
10 years 11 months ago
Systematic integration of experimental data and models in systems biology
Background: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction ...
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Sp...
10 years 11 months ago
Biomodel Engineering - From Structure to Behavior
Biomodel engineering is the science of designing, constructing and analyzing computational models of biological systems. It forms a systematic and powerful extension of earlier mat...
Rainer Breitling, Robin Donaldson, David R. Gilber...
216views more  NAR 2007»
11 years 29 days ago
SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas
To provide an integrated bioinformatics platform for a systems biology approach to the biology of pseudomonads in infection and biotechnology the database SYSTOMONAS (SYSTems biol...
Claudia Choi, Richard Münch, Stefan Leupold, ...
136views more  JIB 2007»
11 years 1 months ago
SABIO-RK: A data warehouse for biochemical reactions and their kinetics
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions...
Olga Krebs, Martin Golebiewski, Renate Kania, Saqi...
95views more  JIB 2007»
11 years 1 months ago
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models
The creation of quantitative, simulatable, Systems Biology Markup Language (SBML) models that accurately simulate the system under study is a time-intensive manual process that re...
Allyson L. Lister, Matthew R. Pocock, Anil Wipat
125views more  BMCBI 2005»
11 years 1 months ago
Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling
ent> <title><p>BioSysBio: Bioinformatics and Systems Biology Conference</p></title> <note>Meeting abstracts
Younes Mokrab, Kenji Mizuguchi
11 years 1 months ago
Abstract interpretation and types for systems biology
Interpretation and Types for Systems Biology Fran
François Fages, Sylvain Soliman
154views more  BMCBI 2007»
11 years 1 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
105views more  BMCBI 2006»
11 years 1 months ago
Integrative investigation of metabolic and transcriptomic data
Background: New analysis methods are being developed to integrate data from transcriptome, proteome, interactome, metabolome, and other investigative approaches. At the same time,...
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ils...