TCBB
2008
13 years 4 months ago
2008
An important topic in genomic sequence analysis is the identification of protein coding regions. In this context, several coding DNA model-independent methods based on the occurren...
TCBB
2008
13 years 4 months ago
2008
When accounting for structural fluctuations or measurement errors, a single rigid structure may not be sufficient to represent a protein. One approach to solve this problem is to r...
TCBB
2008
13 years 4 months ago
2008
A genetic map is an ordering of genetic markers calculated from a population of known lineage. Although, traditionally, a map has been generated from a single population for each s...
TCBB
2008
13 years 4 months ago
2008
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
TCBB
2008
13 years 4 months ago
2008
Two efficient and complementary sampling algorithms are presented to explore the space of closed clash-free conformations of a flexible protein loop. The "seed sampling" ...
TCBB
2008
13 years 4 months ago
2008
TCBB
2008
13 years 4 months ago
2008
The incomplete perfect phylogeny (IPP) problem and the incomplete perfect phylogeny haplotyping (IPPH) problem deal with constructing a phylogeny for a given set of haplotypes or g...
TCBB
2008
13 years 4 months ago
2008
The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
TCBB
2008
13 years 4 months ago
2008
Abstract-- The trans-genomic query (TGQ) problem -- enabling the free query of biological information, even across genomes -- is a central challenge facing bioinformatics. Solution...
TCBB
2008
13 years 4 months ago
2008
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal-angle algorithm is used to draw such networks, producing layouts that leave much room f...