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TCBB
2008
102views more  TCBB 2008»
11 years 6 months ago
Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform
An important topic in genomic sequence analysis is the identification of protein coding regions. In this context, several coding DNA model-independent methods based on the occurren...
Jesus P. Mena-Chalco, Helaine Carrer, Yossi Zana, ...
TCBB
2008
108views more  TCBB 2008»
11 years 6 months ago
Statistical Characterization of Protein Ensembles
When accounting for structural fluctuations or measurement errors, a single rigid structure may not be sufficient to represent a protein. One approach to solve this problem is to r...
Diego Rother, Guillermo Sapiro, Vijay Pande
TCBB
2008
117views more  TCBB 2008»
11 years 6 months ago
Consensus Genetic Maps as Median Orders from Inconsistent Sources
A genetic map is an ordering of genetic markers calculated from a population of known lineage. Although, traditionally, a map has been generated from a single population for each s...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
TCBB
2008
120views more  TCBB 2008»
11 years 6 months ago
Learning Scoring Schemes for Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
Eagu Kim, John D. Kececioglu
TCBB
2008
82views more  TCBB 2008»
11 years 6 months ago
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops
Two efficient and complementary sampling algorithms are presented to explore the space of closed clash-free conformations of a flexible protein loop. The "seed sampling" ...
Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper...
TCBB
2008
78views more  TCBB 2008»
11 years 6 months ago
An Introduction to Metabolic Networks and Their Structural Analysis
Vincent Lacroix, Ludovic Cottret, Patricia Th&eacu...
TCBB
2008
101views more  TCBB 2008»
11 years 6 months ago
The Undirected Incomplete Perfect Phylogeny Problem
The incomplete perfect phylogeny (IPP) problem and the incomplete perfect phylogeny haplotyping (IPPH) problem deal with constructing a phylogeny for a given set of haplotypes or g...
Ravi Vijaya Satya, Amar Mukherjee
TCBB
2008
113views more  TCBB 2008»
11 years 6 months ago
Efficient Algorithms for the Computational Design of Optimal Tiling Arrays
The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
Alexander Schliep, Roland Krause
TCBB
2008
95views more  TCBB 2008»
11 years 6 months ago
Solving the Problem of Trans-Genomic Query with Alignment Tables
Abstract-- The trans-genomic query (TGQ) problem -- enabling the free query of biological information, even across genomes -- is a central challenge facing bioinformatics. Solution...
Douglas Stott Parker Jr., Ruey-Lung Hsiao, Yi Xing...
TCBB
2008
101views more  TCBB 2008»
11 years 6 months ago
Improved Layout of Phylogenetic Networks
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal-angle algorithm is used to draw such networks, producing layouts that leave much room f...
Philippe Gambette, Daniel H. Huson
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