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EDBT
2004
ACM
143views Database» more  EDBT 2004»
15 years 11 months ago
OGSA-DQP: A Service for Distributed Querying on the Grid
OGSA-DQP is a distributed query processor exposed to users as an Open Grid Services Architecture (OGSA)-compliant Grid service. This service supports the compilation and evaluation...
M. Nedim Alpdemir, Arijit Mukherjee, Anastasios Go...
BMCBI
2006
166views more  BMCBI 2006»
14 years 11 months ago
SEQOPTICS: a protein sequence clustering system
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
BMCBI
2010
202views more  BMCBI 2010»
14 years 11 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2010
156views more  BMCBI 2010»
14 years 11 months ago
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Background: Functional genomic studies involving high-throughput sequencing and tiling array applications, such as ChIP-seq and ChIP-chip, generate large numbers of experimentally...
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Pa...
BMCBI
2007
153views more  BMCBI 2007»
14 years 11 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...