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IPPS
2006
IEEE
15 years 5 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
TC
2010
14 years 10 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
HIPC
2009
Springer
14 years 9 months ago
Optimizing the use of GPU memory in applications with large data sets
Abstract--With General Purpose programmable GPUs becoming more and more popular, automated tools are needed to bridge the gap between achievable performance from highly parallel ar...
Nadathur Satish, Narayanan Sundaram, Kurt Keutzer
IPPS
2010
IEEE
14 years 9 months ago
Distributed advance network reservation with delay guarantees
New architectures have recently been proposed and deployed to support end-to-end advance reservation of network resources. These architectures rely on the use a centralized schedul...
Niloofar Fazlollahi, David Starobinski
JRTIP
2008
249views more  JRTIP 2008»
14 years 11 months ago
Model-based mapping of reconfigurable image registration on FPGA platforms
Abstract Image registration is a computationally intensive application in the medical imaging domain that places stringent requirements on performance and memory management efficie...
Mainak Sen, Yashwanth Hemaraj, William Plishker, R...