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BMCBI
2010
129views more  BMCBI 2010»
15 years 5 months ago
A temporal precedence based clustering method for gene expression microarray data
Background: Time-course microarray experiments can produce useful data which can help in understanding the underlying dynamics of the system. Clustering is an important stage in m...
Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Woll...
BMCBI
2010
156views more  BMCBI 2010»
15 years 5 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
BMCBI
2008
107views more  BMCBI 2008»
15 years 5 months ago
A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data
Background: A better understanding of the mechanisms involved in gas-phase fragmentation of peptides is essential for the development of more reliable algorithms for high-throughp...
Cong Zhou, Lucas D. Bowler, Jianfeng Feng
BMCBI
2007
146views more  BMCBI 2007»
15 years 5 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
ENVSOFT
2008
106views more  ENVSOFT 2008»
15 years 5 months ago
Analysis of self-describing gridded geoscience data with netCDF Operators (NCO)
1 The netCDF Operator (NCO) software facilitates manipulation and analysis of gridded2 geoscience data stored in the self-describing netCDF format. NCO is optimized to efficiently3...
Charles S. Zender