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WABI
2001
Springer
112views Bioinformatics» more  WABI 2001»
15 years 10 months ago
Finding an Optimal Inversion Median: Experimental Results
We derive a branch-and-bound algorithm to find an optimal inversion median of three signed permutations. The algorithm prunes to manageable size an extremely large search tree usi...
Adam C. Siepel, Bernard M. E. Moret
BIBE
2000
IEEE
15 years 10 months ago
Reconstructing Specimens using DIC Microscope Images
—Differential interference contrast (DIC) microscopy is a powerful visualization tool used to study live biological cells. Its use, however, has been limited to qualitative obser...
Farhana Kagalwala, Takeo Kanade
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
15 years 9 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
BIBE
2007
IEEE
120views Bioinformatics» more  BIBE 2007»
15 years 9 months ago
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier
Recent research has demonstrated the utility of using supervised classification systems for automatic identification of low quality microarray data. However, this approach requires...
Brian E. Howard, Beate Sick, Imara Perera, Yang Ju...
BIRD
2007
Springer
118views Bioinformatics» more  BIRD 2007»
15 years 9 months ago
Biological Network Inference Using Redundancy Analysis
The paper presents MRNet, an original method for inferring genetic networks from microarray data. This method is based on maximum relevance/minimum redundancy (MRMR), an effective ...
Patrick Emmanuel Meyer, Kevin Kontos, Gianluca Bon...