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DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
15 years 9 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
DNA
2009
Springer
194views Bioinformatics» more  DNA 2009»
15 years 9 months ago
A Domain-Specific Language for Programming in the Tile Assembly Model
We introduce a domain-specific language (DSL) for creating sets of tile types for simulations bstract Tile Assembly Model. The language defines objects known as tile templates, wh...
David Doty, Matthew J. Patitz
BIBE
2004
IEEE
179views Bioinformatics» more  BIBE 2004»
15 years 9 months ago
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study
This research explores the feasibility of semantic similarity approaches to supporting predictive tasks in functional genomics. It aims to establish potential relationships betwee...
Francisco Azuaje, Olivier Bodenreider
BIBE
2004
IEEE
128views Bioinformatics» more  BIBE 2004»
15 years 9 months ago
Towards a Proteomics Meta-Classification
There is a recognized need for a meta-classification that can serve as a foundation for more refined ontologies in the field of proteomics. Standard data sources classify proteins...
Anand Kumar, Barry Smith
BIBE
2004
IEEE
15 years 9 months ago
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds
Biologists highly rely on good algorithms for finding homologous regions in bimolecular sequences. An advanced homology search program named PatternHunter has recently been develo...
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsi...