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» Clustering cancer gene expression data: a comparative study
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BMCBI
2004
97views more  BMCBI 2004»
14 years 11 months ago
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
Background: Non-linearities in observed log-ratios of gene expressions, also known as intensity dependent log-ratios, can often be accounted for by global biases in the two channe...
Henrik Bengtsson, Göran Jönsson, Johan V...
BMCBI
2010
138views more  BMCBI 2010»
14 years 11 months ago
UFFizi: a generic platform for ranking informative features
Background: Feature selection is an important pre-processing task in the analysis of complex data. Selecting an appropriate subset of features can improve classification or cluste...
Assaf Gottlieb, Roy Varshavsky, Michal Linial, Dav...
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BMCBI
2008
125views more  BMCBI 2008»
14 years 11 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
NAR
2006
89views more  NAR 2006»
14 years 11 months ago
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate
The Onto-Tools suite is composed of an annotation database and eight complementary, web-accessible data mining tools: Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto...
Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivaku...
BMCBI
2010
139views more  BMCBI 2010»
14 years 11 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler