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» Efficient protein alignment algorithm for protein search
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JDA
2008
87views more  JDA 2008»
14 years 11 months ago
Lossless filter for multiple repetitions with Hamming distance
Similarity search in texts, notably in biological sequences, has received substantial attention in the last few years. Numerous filtration and indexing techniques have been create...
Pierre Peterlongo, Nadia Pisanti, Fréd&eacu...
NAR
2010
123views more  NAR 2010»
14 years 6 months ago
Discovering causal signaling pathways through gene-expression patterns
High-throughput gene-expression studies result in lists of differentially expressed genes. Most current meta-analyses of these gene lists include searching for significant members...
Jignesh R. Parikh, Bertram Klinger, Yu Xia, Jarrod...
ICML
2004
IEEE
16 years 15 days ago
Training conditional random fields via gradient tree boosting
Conditional Random Fields (CRFs; Lafferty, McCallum, & Pereira, 2001) provide a flexible and powerful model for learning to assign labels to elements of sequences in such appl...
Thomas G. Dietterich, Adam Ashenfelter, Yaroslav B...
TCBB
2008
126views more  TCBB 2008»
14 years 11 months ago
Combinatorial Approaches for Mass Spectra Recalibration
Mass spectrometry has become one of the most popular analysis techniques in Proteomics and Systems Biology. With the creation of larger data sets, the automated recalibration of ma...
Sebastian Böcker, Veli Mäkinen
GCB
1998
Springer
78views Biometrics» more  GCB 1998»
15 years 3 months ago
Computational approaches to identify Leucine Zippers
The leucine zipper is a dimerization domain occurring mostly in regulatory and thus in many oncogenic proteins. The leucine repeat in the sequence has been traditionally used for ...
Erich Bornberg-Bauer