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    » Efficient protein alignment algorithm for protein search
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    BMCBI
    2010
    124views more  BMCBI 2010»
    Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
    14 years 11 months ago
    Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
    Download  www.biomedcentral.com
    Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
    Norman E. Davey, Richard J. Edwards, Denis C. Shie...
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    ECCB
    2005
    IEEE
    99views Computational Biology» more  ECCB 2005»
    SIMAP - The similarity matrix of proteins
    15 years 5 months ago
    SIMAP - The similarity matrix of proteins
    Download  nar.oxfordjournals.org
    Similarity Matrix of Proteins (SIMAP) (http://mips.gsf. 10 de/simap) provides a database based on a precomputed similarity matrix covering the similarity space formed by .4 millio...
    Roland Arnold, Thomas Rattei, Patrick Tischler, Mi...
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    BMCBI
    2006
    107views more  BMCBI 2006»
    A reinforced merging methodology for mapping unique peptide motifs in members of protein families
    14 years 11 months ago
    A reinforced merging methodology for mapping unique peptide motifs in members of protein families
    Download  www.biomedcentral.com
    Background: Members of a protein family often have highly conserved sequences; most of these sequences carry identical biological functions and possess similar three-dimensional (...
    Hao-Teng Chang, Tun-Wen Pai, Tan-Chi Fan, Bo-Han S...
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    BMCBI
    2007
    128views more  BMCBI 2007»
    A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
    14 years 11 months ago
    A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
    Download  www.biomedcentral.com
    Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
    Lei Xie, Philip E. Bourne
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    BIOINFORMATICS
    2008
    99views more  BIOINFORMATICS 2008»
    Integrated search and alignment of protein structures
    14 years 11 months ago
    Integrated search and alignment of protein structures
    Download  www.cse.ohio-state.edu
    Ahmet Sacan, Ismail Hakki Toroslu, Hakan Ferhatosm...
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