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BMCBI
2007
112views more  BMCBI 2007»
14 years 11 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
GECCO
2003
Springer
191views Optimization» more  GECCO 2003»
15 years 4 months ago
Artificial Immune System for Classification of Gene Expression Data
DNA microarray experiments generate thousands of gene expression measurement simultaneously. Analyzing the difference of gene expression in cell and tissue samples is useful in dia...
Shin Ando, Hitoshi Iba
BMCBI
2010
161views more  BMCBI 2010»
14 years 11 months ago
GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms
Background: An important objective of DNA microarray-based gene expression experimentation is determining interrelationships that exist between differentially expressed genes and ...
Saurin D. Jani, Gary L. Argraves, Jeremy L. Barth,...
WOB
2007
116views Bioinformatics» more  WOB 2007»
15 years 25 days ago
Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information
Abstract. We propose a method for global validation of gene clusterings. The method selects a set of informative and non-redundant GO terms through an exploration of the Gene Ontol...
Ivan G. Costa, Marcílio Carlos Pereira de S...
BMCBI
2006
127views more  BMCBI 2006»
14 years 11 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...