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ACAL
2007
Springer
15 years 6 months ago
An Integrated QAP-Based Approach to Visualize Patterns of Gene Expression Similarity
Abstract. This paper illustrates how the Quadratic Assignment Problem (QAP) is used as a mathematical model that helps to produce a visualization of microarray data, based on the r...
Mario Inostroza-Ponta, Alexandre Mendes, Regina Be...
BMCBI
2008
117views more  BMCBI 2008»
14 years 12 months ago
New resampling method for evaluating stability of clusters
Background: Hierarchical clustering is a widely applied tool in the analysis of microarray gene expression data. The assessment of cluster stability is a major challenge in cluste...
Irina Gana Dresen, Tanja Boes, Johannes Hüsin...
BMCBI
2006
149views more  BMCBI 2006»
14 years 12 months ago
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteri
Background: Accurate interpretation of data obtained by unsupervised analysis of large scale expression profiling studies is currently frequently performed by visually combining s...
Roel G. W. Verhaak, Mathijs A. Sanders, Maarten A....
JMLR
2010
108views more  JMLR 2010»
14 years 6 months ago
Feature Selection using Multiple Streams
Feature selection for supervised learning can be greatly improved by making use of the fact that features often come in classes. For example, in gene expression data, the genes wh...
Paramveer S. Dhillon, Dean P. Foster, Lyle H. Unga...
BIBM
2009
IEEE
172views Bioinformatics» more  BIBM 2009»
15 years 4 months ago
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
—A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
Yoon Soo Pyon, Jing Li