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BMCBI
2006
107views more  BMCBI 2006»
14 years 11 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
OOPSLA
2007
Springer
15 years 5 months ago
Notation and representation in collaborative object-oriented design: an observational study
Software designers in the object-oriented paradigm can make use of modeling tools and standard notations such as UML. Nevertheless, casual observations from collocated design coll...
Uri Dekel, James D. Herbsleb
BMCBI
2010
155views more  BMCBI 2010»
14 years 11 months ago
FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Background: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a ...
Stephen J. Goodswen, Cedric Gondro, Nathan S. Wats...
BMCBI
2008
150views more  BMCBI 2008»
14 years 11 months ago
BibGlimpse: The case for a light-weight reprint manager in distributed literature research
Background: While text-mining and distributed annotation systems both aim at capturing knowledge and presenting it in a standardized form, there have been few attempts to investig...
Thomas Tüchler, Golda Velez, Alexandra Graf, ...
BMCBI
2008
143views more  BMCBI 2008»
14 years 11 months ago
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Background: The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, ...
Shibu Yooseph, Weizhong Li, Granger G. Sutton