Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
We consider the problem of learning a labeled graph from a given family of graphs on n vertices in a model where the only allowed operation is to query whether a set of vertices i...
Given a graph G = (V, E) and a positive integer k, the Proper Interval Completion problem asks whether there exists a set F of at most k pairs of (V × V ) \ E such that the graph...
We develop a new framework for inferring models of transcriptional regulation. The models in this approach, which we call physical models, are constructed on the basis of verifiab...
Proteins are involved either directly or indirectly in all biological processes in living organisms. It is now widely accepted that conformational changes of proteins can critical...
Miguel L. Teodoro, George N. Phillips, Lydia E. Ka...