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BMCBI
2011
14 years 6 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
ICALP
2004
Springer
15 years 5 months ago
Learning a Hidden Subgraph
We consider the problem of learning a labeled graph from a given family of graphs on n vertices in a model where the only allowed operation is to query whether a set of vertices i...
Noga Alon, Vera Asodi
CORR
2011
Springer
143views Education» more  CORR 2011»
14 years 3 months ago
Polynomial kernels for Proper Interval Completion and related problems
Given a graph G = (V, E) and a positive integer k, the Proper Interval Completion problem asks whether there exists a set F of at most k pairs of (V × V ) \ E such that the graph...
Stéphane Bessy, Anthony Perez
RECOMB
2003
Springer
16 years 7 hour ago
Physical network models and multi-source data integration
We develop a new framework for inferring models of transcriptional regulation. The models in this approach, which we call physical models, are constructed on the basis of verifiab...
Chen-Hsiang Yeang, Tommi Jaakkola
RECOMB
2002
Springer
16 years 7 hour ago
A dimensionality reduction approach to modeling protein flexibility
Proteins are involved either directly or indirectly in all biological processes in living organisms. It is now widely accepted that conformational changes of proteins can critical...
Miguel L. Teodoro, George N. Phillips, Lydia E. Ka...