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CPM
2004
Springer
168views Combinatorics» more  CPM 2004»
15 years 5 months ago
The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices
In this paper we investigate the protein sequence design (PSD) problem (also known as the inverse protein folding problem) under the Canonical model 4 on 2D and 3D lattices [12, 25...
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...
ESA
2004
Springer
92views Algorithms» more  ESA 2004»
15 years 5 months ago
Finding Dominators in Practice
The computation of dominators in a flowgraph has applications in several areas, including program optimization, circuit testing, and theoretical biology. Lengauer and Tarjan [30]...
Loukas Georgiadis, Renato Fonseca F. Werneck, Robe...
WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
15 years 4 months ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
CN
2008
98views more  CN 2008»
14 years 12 months ago
Description and simulation of dynamic mobility networks
During the last decade, the study of large scale complex networks has attracted a substantial amount of attention and works from several domains: sociology, biology, computer scie...
Antoine Scherrer, Pierre Borgnat, Eric Fleury, Jea...
BMCBI
2006
142views more  BMCBI 2006»
14 years 12 months ago
Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with
Background: Common fragile sites (cfs) are specific regions in the human genome that are particularly prone to genomic instability under conditions of replicative stress. Several ...
Angela Re, Davide Corà, Alda Maria Puliti, ...