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JCB
2006
215views more  JCB 2006»
13 years 10 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
NAR
2000
152views more  NAR 2000»
13 years 10 months ago
ASDB: database of alternatively spliced genes
Version 2.1 of ASDB (Alternative Splicing Data Base) contains 1922 protein and 2486 DNA sequences. The protein entries from SWISS-PROT are joined into clusters corresponding to al...
I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Ma...
BMCBI
2005
125views more  BMCBI 2005»
13 years 10 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
BMCBI
2004
142views more  BMCBI 2004»
13 years 10 months ago
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
Background: Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed...
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Sno...
WWW
2007
ACM
14 years 10 months ago
Extraction and search of chemical formulae in text documents on the web
Often scientists seek to search for articles on the Web related to a particular chemical. When a scientist searches for a chemical formula using a search engine today, she gets ar...
Bingjun Sun, Qingzhao Tan, Prasenjit Mitra, C. Lee...