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BMCBI
2011
14 years 6 months ago
Bio: : Phylo - phyloinformatic analysis using Perl
Background: Phyloinformatic analyses involve large amounts of data and metadata of complex structure. Collecting, processing, analyzing, visualizing and summarizing these data and...
Rutger A. Vos, Jason Caravas, Klaas Hartmann, Mark...
RECOMB
2001
Springer
16 years 3 days ago
Fast recovery of evolutionary trees with thousands of nodes
We present a novel distance-based algorithm for evolutionary tree reconstruction. Our algorithm reconstructs the topology of a tree with n leaves in O(n2 ) time using O(n) working...
Miklós Csürös
SJ
2011
14 years 6 months ago
Analyzing the Resilience of Complex Supply Network Topologies Against Random and Targeted Disruptions
—In this paper, we study the resilience of supply networks against disruptions and provide insights to supply chain managers on how to construct a resilient supply network from t...
Kang Zhao, Akhil Kumar, Terry P. Harrison, John Ye...
BMCBI
2011
14 years 6 months ago
Implementation of Force Distribution Analysis for Molecular Dynamics simulations
Background: The way mechanical stress is distributed inside and propagated by proteins and other biopolymers largely defines their function. Yet, determining the network of intera...
Wolfram Stacklies, Christian Seifert, Frauke Graet...
MABS
2000
Springer
15 years 3 months ago
Multi Agent Based Simulation: Beyond Social Simulation
Multi Agent Based Simulation (MABS) has been used mostly in purely social contexts. However, compared to other approaches, e.g., traditional discrete event simulation, object-orien...
Paul Davidsson