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» On the Design of Codes for DNA Computing
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BMCBI
2006
128views more  BMCBI 2006»
14 years 12 months ago
Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
HIPC
2009
Springer
14 years 9 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
BMCBI
2007
135views more  BMCBI 2007»
14 years 12 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...
DNA
2008
Springer
149views Bioinformatics» more  DNA 2008»
15 years 1 months ago
Connecting the Dots: Molecular Machinery for Distributed Robotics
Abstract. Nature is considered one promising area to search for inspiration in designing robotic systems. Some work in swarm robotics has tried to build systems that resemble distr...
Yuriy Brun, Dustin Reishus
DAM
2007
91views more  DAM 2007»
14 years 11 months ago
Integer linear programming approaches for non-unique probe selection
In addition to their prevalent use for analyzing gene expression, DNA microarrays are an efficient tool for biological, medical, and industrial applications because of their abil...
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, M...