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» Optimizing the Use of High Performance Software Libraries
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OOPSLA
2010
Springer
15 years 3 months ago
Composable specifications for structured shared-memory communication
In this paper we propose a communication-centric approach to specifying and checking how multithreaded programs use shared memory to perform inter-thread communication. Our approa...
Benjamin P. Wood, Adrian Sampson, Luis Ceze, Dan G...
CEC
2009
IEEE
16 years 24 days ago
GPU-based parallel particle swarm optimization
— A novel parallel approach to run standard particle swarm optimization (SPSO) on Graphic Processing Unit (GPU) is presented in this paper. By using the general-purpose computing...
You Zhou, Ying Tan
GECCO
2007
Springer
300views Optimization» more  GECCO 2007»
16 years 5 days ago
A NSGA-II, web-enabled, parallel optimization framework for NLP and MINLP
Engineering design increasingly uses computer simulation models coupled with optimization algorithms to find the best design that meets the customer constraints within a time con...
David J. Powell, Joel K. Hollingsworth
BMCBI
2004
150views more  BMCBI 2004»
15 years 5 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
BMCBI
2006
122views more  BMCBI 2006»
15 years 6 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...