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2000
ACM
15 years 10 months ago
Scalable Molecular Dynamics for Large Biomolecular Systems
We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
HPDC
1999
IEEE
15 years 9 months ago
PARED: A Framework for the Adaptive Solution of PDEs
We describe our experience using PARED, an object oriented system for the adaptive solution of PDEs in a distributed computing environment. PARED handles selective mesh refinement...
José G. Castaños, John E. Savage
ACPC
1999
Springer
15 years 9 months ago
MPI-parallelized Radiance on SGI CoW and SMP
For lighting simulations in architecture there is the need for correct illumination calculation of virtual scenes. The Radiance Synthetic Imaging System delivers an excellent solut...
Roland Koholka, Heinz Mayer, Alois Goller
IPPS
1999
IEEE
15 years 9 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...
IPPS
1999
IEEE
15 years 9 months ago
Self-Avoiding Walks over Adaptive Unstructured Grids
Abstract. In this paper, we present self-avoiding walks as a novel technique to linearize" a triangular mesh. Unlike space- lling curves which are based on a geometric embeddi...
Gerd Heber, Rupak Biswas, Guang R. Gao