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LPNMR
2009
Springer

HAPLO-ASP: Haplotype Inference Using Answer Set Programming

9 years 7 months ago
HAPLO-ASP: Haplotype Inference Using Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. However, due to technological limitations, we have access to genotype data (genetic makeup of an individual), and determining haplotypes (genetic makeup of the parents) experimentally is a costly and time consuming procedure. With these biological motivations, we study haplotype inference—determining the haplotypes that form a given set of genotypes—using Answer Set Programming; we call our approach HAPLO-ASP. This note summarizes the range of problems that can be handled by HAPLO-ASP, and its applicability and effectiveness on real data in comparison with the other existing approaches.
Esra Erdem, Ozan Erdem, Ferhan Türe
Added 26 Jul 2010
Updated 26 Jul 2010
Type Conference
Year 2009
Where LPNMR
Authors Esra Erdem, Ozan Erdem, Ferhan Türe
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