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LPNMR
2009
Springer
2009
Springer
HAPLO-ASP: Haplotype Inference Using Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. However, due to technological limitations, we have access to genotype data (genetic makeup of an individual), and determining haplotypes (genetic makeup of the parents) experimentally is a costly and time consuming procedure. With these biological motivations, we study haplotype inference—determining the haplotypes that form a given set of genotypes—using Answer Set Programming; we call our approach HAPLO-ASP. This note summarizes the range of problems that can be handled by HAPLO-ASP, and its applicability and effectiveness on real data in comparison with the other existing approaches.
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| Added | 26 Jul 2010 |
| Updated | 26 Jul 2010 |
| Type | Conference |
| Year | 2009 |
| Where | LPNMR |
| Authors | Esra Erdem, Ozan Erdem, Ferhan Türe |
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