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» HAPLO-ASP: Haplotype Inference Using Answer Set Programming
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LPNMR
2009
Springer
13 years 9 months ago
HAPLO-ASP: Haplotype Inference Using Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. However, due to technological limitations, we ...
Esra Erdem, Ozan Erdem, Ferhan Türe
AAAI
2008
13 years 6 months ago
Efficient Haplotype Inference with Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. Although we have access to genotype data (gene...
Esra Erdem, Ferhan Türe
ICTAI
2008
IEEE
13 years 11 months ago
Haplotype Inference with Boolean Constraint Solving: An Overview
Boolean satisfiability (SAT) finds a wide range of practical applications, including Artificial Intelligence and, more recently, Bioinformatics. Although encoding some combinat...
Inês Lynce, Ana Graça, João Ma...
INFORMS
2010
107views more  INFORMS 2010»
13 years 3 months ago
A Class Representative Model for Pure Parsimony Haplotyping
Haplotyping estimation from aligned Single Nucleotide Polymorphism (SNP) fragments has attracted more and more attention in the recent years due to its importance in analysis of m...
Daniele Catanzaro, Alessandra Godi, Martine Labb&e...
JAR
2007
72views more  JAR 2007»
13 years 4 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...