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ICMLA
2008

Microarray Classification from Several Two-Gene Expression Comparisons

9 years 16 days ago
Microarray Classification from Several Two-Gene Expression Comparisons
We describe our contribution to the ICMLA2008 "Automated Micro-Array Classification Challenge". The design of our classifier is motivated by the special scenario encountered in molecular cancer classification based on the mRNA concentrations provided by gene microarray data. Our classifier is rank-based; it only depends on expression comparisons among selected pairs of genes. Such comparisons are invariant to most of the transformations involved in preprocessing and normalization. Every pair of genes determines a binary classifier - choose the class for which the observed ordering is most likely. Pairs are scored by maximizing accuracy. In our k-TSP (k-disjoint Top Scoring Pairs) classifier, k disjoint pairs of genes are learned from training data; the discriminant function is simply the difference in the number of votes for the two classes. This rule involves exactly 2k genes, is readily interpretable, and provides some state-of-the-art results in
Donald Geman, Bahman Afsari, Aik Choon Tan, Daniel
Added 29 Oct 2010
Updated 29 Oct 2010
Type Conference
Year 2008
Where ICMLA
Authors Donald Geman, Bahman Afsari, Aik Choon Tan, Daniel Q. Naiman
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