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7

ASAP
2007
IEEE

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Parallelizing HMMER for Hardware Acceleration on FPGAs

13 years 11 months ago

Parallelizing HMMER for Hardware Acceleration on FPGAs

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Proﬁle based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive execution time. We propose an original parallelization scheme of the hmmsearch tool for FPGA technology. We show how to derive a ﬂexible and generic hardware architecture which accelerates the hmmsearch main kernel by two orders of magnitude without modifying its original algorithm.

Steven Derrien, Patrice Quinton

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ASAP 2007 | Distributed And Parallel Computing | Hidden Markov Model | Hmmsearch Main Kernel | Hmmsearch Tool |

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Added	02 Jun 2010
Updated	02 Jun 2010
Type	Conference
Year	2007
Where	ASAP
Authors	Steven Derrien, Patrice Quinton

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