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2000

Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers

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Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The program can be used to routinely fold RNA sequences of more than 10,000 nucleotides. Applications to complete viral genomes are discussed. Key words: RNA secondary structure, RNA folding, RNA partition function, parallel computing, MPI, message passing.
Martin Fekete, Ivo L. Hofacker, Peter F. Stadler
Added 18 Dec 2010
Updated 18 Dec 2010
Type Journal
Year 2000
Where JCB
Authors Martin Fekete, Ivo L. Hofacker, Peter F. Stadler
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