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» A Bayesian Approach to Model Checking Biological Systems
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RP
2009
Springer
136views Control Systems» more  RP 2009»
14 years 8 days ago
Probabilistic Model Checking of Biological Systems with Uncertain Kinetic Rates
We present an abstraction of the probabilistic semantics of Multiset Rewriting to formally express systems of reactions with uncertain kinetic rates. This allows biological systems...
Roberto Barbuti, Francesca Levi, Paolo Milazzo, Gu...
SIGMETRICS
2008
ACM
130views Hardware» more  SIGMETRICS 2008»
13 years 5 months ago
Using probabilistic model checking in systems biology
Probabilistic model checking is a formal verification framework for systems which exhibit stochastic behaviour. It has been successfully applied to a wide range of domains, includ...
Marta Z. Kwiatkowska, Gethin Norman, David Parker
CAV
2005
Springer
101views Hardware» more  CAV 2005»
13 years 11 months ago
Algorithmic Algebraic Model Checking I: Challenges from Systems Biology
Carla Piazza, Marco Antoniotti, Venkatesh Mysore, ...
ASM
2010
ASM
13 years 9 months ago
A Refinement-Based Correctness Proof of Symmetry Reduced Model Checking
Symmetry reduction is a model checking technique that can help alleviate the problem of state space explosion, by preventing redundant state space exploration. In previous work, we...
Edd Turner, Michael J. Butler, Michael Leuschel
BMCBI
2010
147views more  BMCBI 2010»
13 years 5 months ago
Learning biological network using mutual information and conditional independence
Background: Biological networks offer us a new way to investigate the interactions among different components and address the biological system as a whole. In this paper, a revers...
Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean G...