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ISMB
2000
13 years 6 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...
BMCBI
2010
148views more  BMCBI 2010»
13 years 5 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2010
161views more  BMCBI 2010»
13 years 5 months ago
FRASS: the web-server for RNA structural comparison
Background: The impressive increase of novel RNA structures, during the past few years, demands automated methods for structure comparison. While many algorithms handle only small...
Svetlana Kirillova, Silvio C. E. Tosatto, Oliviero...
IVS
2008
121views more  IVS 2008»
13 years 4 months ago
Using treemaps for variable selection in spatio-temporal visualisation
We demonstrate and reflect upon the use of enhanced treemaps that incorporate spatial and temporal ordering for exploring a large multivariate spatio-temporal data set. The result...
Aidan Slingsby, Jason Dykes, Jo Wood

Publication
352views
12 years 10 months ago
A Contourlet Transform Feature Extraction Scheme for Ultrasound Thyroid Texture Classification
Ultrasonography is an invaluable and widely used medical imaging tool. Nevertheless, automatic texture analysis on ultrasound images remains a challenging issue. This work presen...
Stamos Katsigiannis, Eystratios G. Keramidas, Dimi...