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IPPS
2010
IEEE
13 years 3 months ago
On the parallelisation of MCMC by speculative chain execution
Abstract--The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov C...
Jonathan M. R. Byrd, Stephen A. Jarvis, Abhir H. B...
RECOMB
2004
Springer
14 years 5 months ago
Computational identification of evolutionarily conserved exons
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
Adam C. Siepel, David Haussler
BMCBI
2006
127views more  BMCBI 2006»
13 years 5 months ago
Automatic discovery of cross-family sequence features associated with protein function
Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
Markus Brameier, Josien Haan, Andrea Krings, Rober...
FAST
2009
13 years 3 months ago
Enabling Transactional File Access via Lightweight Kernel Extensions
Transactions offer a powerful data-access method used in many databases today trough a specialized query API. User applications, however, use a different fileaccess API (POSIX) wh...
Richard P. Spillane, Sachin Gaikwad, Manjunath Chi...
HIPC
2009
Springer
13 years 3 months ago
Fast checkpointing by Write Aggregation with Dynamic Buffer and Interleaving on multicore architecture
Large scale compute clusters continue to grow to ever-increasing proportions. However, as clusters and applications continue to grow, the Mean Time Between Failures (MTBF) has redu...
Xiangyong Ouyang, Karthik Gopalakrishnan, Tejus Ga...