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» A Computational Approach to Binding Theory
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CONCUR
2009
Springer
13 years 12 months ago
Variable Binding, Symmetric Monoidal Closed Theories, and Bigraphs
Richard H. G. Garner, Tom Hirschowitz, Auré...
CIBCB
2007
IEEE
13 years 11 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
RECOMB
2007
Springer
14 years 5 months ago
A Feature-Based Approach to Modeling Protein-DNA Interactions
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
Eilon Sharon, Eran Segal
DSOM
2005
Springer
13 years 11 months ago
An Approach to Understanding Policy Based on Autonomy and Voluntary Cooperation
Presently, there is no satisfactory model for dealing with political autonomy of agents in policy based management. A theory of atomic policy units called ‘promises’ is therefo...
Mark Burgess
ALMOB
2006
86views more  ALMOB 2006»
13 years 5 months ago
Analysis of computational approaches for motif discovery
Recently, we performed an assessment of 13 popular computational tools for discovery of transcription factor binding sites (M. Tompa, N. Li, et al., "Assessing Computational ...
Nan Li, Martin Tompa