We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Graphs capture the essential elements of many problems broadly defined as searching or categorizing. With the rapid increase of data volumes from sensors, many application discipl...
The OSGiTM Service Platform is becoming the de facto standard for modularized Java applications. The market of OSGi based COTS components is continuously growing. OSGi specific pro...