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DNA
2011
Springer
5 months 11 days ago
Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems
We study the potential for molecule recycling in chemical reaction systems and their DNA strand displacement realizations. Recycling happens when a product of one reaction is a rea...
Anne Condon, Alan J. Hu, Ján Manuch, Chris ...
DNA
2011
Springer
5 months 11 days ago
Cooperative Assembly Systems
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Vincent Danos, Heinz Koeppl, John Wilson-Kanamori
DNA
2011
Springer
5 months 11 days ago
Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes
Sticker complexes are a a formal graph-based data model for a restricted class of DNA complexes, motivated by potential applications to databases. This data model allows for a pure...
Robert Brijder, Joris J. M. Gillis, Jan Van den Bu...
ISBRA
2011
Springer
9 months 1 days ago
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction
Abstract. Protein homology prediction is a crucial step in templatebased protein structure prediction. The functions that rank the proteins in a database according to their homolog...
Yan Fu, Rong Pan, Qiang Yang, Wen Gao
BIBE
2010
IEEE
9 months 8 days ago
A Novel Wavelet Based Algorithm for Spike and Wave Detection in Absence Epilepsy
—Absence seizures are characterized by sudden loss of consciousness and interruption of ongoing motor activities for a brief period of time lasting few to several seconds and up ...
Petros Xanthopoulos, Steffen Rebennack, Chang-Chia...

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stamosStudent, PhD
Department of Informatics and Telecommunications, University of Athens, Greece
stamos
JBI
2011
12 months 2 days ago
Towards an ontological representation of resistance: The case of MRSA
This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. Resistance terms from various existing on...
Albert Goldfain, Barry Smith, Lindsay G. Cowell
JBI
2010
1 years 9 days ago
Cloud computing: A new business paradigm for biomedical information sharing
We examine how the biomedical informatics (BMI) community, especially consortia that share data and applications, can take advantage of a new resource called cloud computing. Clou...
Arnon Rosenthal, Peter Mork, Maya Hao Li, Jean Sta...
BCB
2010
1 years 13 days ago
Gene set analysis using principal components
We present a new method for identifying gene sets associated with labeled samples, where the labels can be case versus control, or genotype differences. Existing approaches to thi...
Isa Kemal Pakatci, Wei Wang, Leonard McMillan
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