145 search results - page 2 / 29 » A First Approach to Finding Common Motifs With Gaps |
NAR
2008
13 years 5 months ago
2008
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
BMCBI
2007
13 years 5 months ago
2007
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
CPM
2006
Springer
13 years 9 months ago
2006
Springer
Many algorithms for motif finding that are commonly used in bioinformatics start by sampling r potential motif occurrences from n input sequences. The motif is derived from these s...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
BMCBI
2007
13 years 5 months ago
2007
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...