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» A General Edit Distance between RNA Structures
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CPM
2008
Springer
154views Combinatorics» more  CPM 2008»
13 years 6 months ago
Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots
We present an algorithm for computing the edit distance of two RNA structures with arbitrary kinds of pseudoknots. A main benefit of the algorithm is that, despite the problem is N...
Mathias Möhl, Sebastian Will, Rolf Backofen
ECML
2006
Springer
13 years 8 months ago
Learning Stochastic Tree Edit Distance
Trees provide a suited structural representation to deal with complex tasks such as web information extraction, RNA secondary structure prediction, or conversion of tree structured...
Marc Bernard, Amaury Habrard, Marc Sebban
ECML
2007
Springer
13 years 11 months ago
Learning Metrics Between Tree Structured Data: Application to Image Recognition
The problem of learning metrics between structured data (strings, trees or graphs) has been the subject of various recent papers. With regard to the specific case of trees, some a...
Laurent Boyer 0002, Amaury Habrard, Marc Sebban
BIBE
2006
IEEE
132views Bioinformatics» more  BIBE 2006»
13 years 11 months ago
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments
Ribonucleic acid (RNA) molecules contain the genetic information that regulates the functions of organisms. Given two different molecules, a preserved function corresponds to a pr...
Rimon Mikhaiel, Guohui Lin, Eleni Stroulia
IDEAL
2007
Springer
13 years 11 months ago
A New Dissimilarity Measure Between Trees by Decomposition of Unit-Cost Edit Distance
Abstract. Tree edit distance is a conventional dissimilarity measure between labeled trees. However, tree edit distance including unit-cost edit distance contains the similarity of...
Hisashi Koga, Hiroaki Saito, Toshinori Watanabe, T...