In the last years haplotype reconstruction and haplotype blocks discovery, i.e., the estimation of patterns of linkage disequilibrium (LD) in the haplotypes, riveted the attention ...
Alessandro Perina, Marco Cristani, Giovanni Malerb...
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko ...
Abstract. A hidden Markov model is introduced for descriptive modelling the mosaic–like structures of haplotypes, due to iterated recombinations within a population. Methods usin...
Mikko Koivisto, Teemu Kivioja, Heikki Mannila, Pas...
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Compressive sensing aims to recover a sparse or compressible signal from a small set of projections onto random vectors; conventional solutions involve linear programming or greed...
Marco F. Duarte, Michael B. Wakin, Richard G. Bara...