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» A Hidden Markov Technique for Haplotype Reconstruction
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WILF
2007
Springer
127views Fuzzy Logic» more  WILF 2007»
13 years 11 months ago
Unsupervised Haplotype Reconstruction and LD Blocks Discovery in a Hidden Markov Framework
In the last years haplotype reconstruction and haplotype blocks discovery, i.e., the estimation of patterns of linkage disequilibrium (LD) in the haplotypes, riveted the attention ...
Alessandro Perina, Marco Cristani, Giovanni Malerb...
WABI
2005
Springer
118views Bioinformatics» more  WABI 2005»
13 years 10 months ago
A Hidden Markov Technique for Haplotype Reconstruction
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko ...
ALT
2004
Springer
14 years 2 months ago
Hidden Markov Modelling Techniques for Haplotype Analysis
Abstract. A hidden Markov model is introduced for descriptive modelling the mosaic–like structures of haplotypes, due to iterated recombinations within a population. Methods usin...
Mikko Koivisto, Teemu Kivioja, Heikki Mannila, Pas...
JCB
2006
123views more  JCB 2006»
13 years 5 months ago
Reconstructing Ancestral Haplotypes with a Dictionary Model
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Kristin L. Ayers, Chiara Sabatti, Kenneth Lange
ICASSP
2008
IEEE
13 years 11 months ago
Wavelet-domain compressive signal reconstruction using a Hidden Markov Tree model
Compressive sensing aims to recover a sparse or compressible signal from a small set of projections onto random vectors; conventional solutions involve linear programming or greed...
Marco F. Duarte, Michael B. Wakin, Richard G. Bara...