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DILS
2006
Springer
13 years 8 months ago
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
Linking the biomedical literature to other data resources is notoriously difficult and requires text mining. Text mining aims to automatically extract facts from literature. Since ...
Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Mi...
CICLING
2007
Springer
13 years 9 months ago
Rule-Based Protein Term Identification with Help from Automatic Species Tagging
In biomedical articles, terms often refer to different protein entities. For example, an arbitrary occurrence of term p53 might denote thousands of proteins across a number of spec...
Xinglong Wang
BMCBI
2008
139views more  BMCBI 2008»
13 years 5 months ago
New challenges for text mining: mapping between text and manually curated pathways
Background: Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the identification of th...
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okan...
BMCBI
2010
162views more  BMCBI 2010»
13 years 5 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
BMCBI
2010
153views more  BMCBI 2010»
13 years 5 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...