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» A Mechanization of Phylogenetic Trees
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ACL2
2006
ACM
13 years 10 months ago
Phylogenetic trees in ACL2
Biologists studying the evolutionary relationships between organisms use software packages to solve the computational problems they encounter. Several of these problems involve th...
Warren A. Hunt Jr., Serita M. Nelesen
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
13 years 10 months ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
CEC
2003
IEEE
13 years 8 months ago
Phylogenetic trees using evolutionary search: initial progress in extending Gaphyl to work with genetic data
AbstractGaphyl is an application of evolutionary algorithms (EA's) to phylogenetics, an approach used by biologists to investigate evolutionary relationships among organisms. ...
Clare Bates Congdon, Kevin J. Septor
LPNMR
2009
Springer
13 years 9 months ago
PHYLO-ASP: Phylogenetic Systematics with Answer Set Programming
This note summarizes the use of Answer Set Programming to solve various computational problems to infer phylogenetic trees and phylogenetic networks, and discusses its applicabilit...
Esra Erdem