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BMCBI
2005
134views more  BMCBI 2005»
13 years 4 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
CPM
2004
Springer
84views Combinatorics» more  CPM 2004»
13 years 10 months ago
Small Phylogeny Problem: Character Evolution Trees
Abstract. Phylogenetics is a science of determining connections between groups of organisms in terms of ancestor/descendent relationships, usually expressed by phylogenetic trees, ...
Arvind Gupta, Ján Manuch, Ladislav Stacho, ...
BIBE
2003
IEEE
13 years 10 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 6 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
CCECE
2006
IEEE
13 years 11 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...