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COCOA
2007
Springer
13 years 11 months ago
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Jean-Michel Richer, Vincent Derrien, Jin-Kao Hao
BMEI
2008
IEEE
13 years 11 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
BMCBI
2006
139views more  BMCBI 2006»
13 years 4 months ago
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
Shinsuke Yamada, Osamu Gotoh, Hayato Yamana
CP
2003
Springer
13 years 10 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny